Discover gists

List of tools with relevance for genomic coordinates management and comparison, referring especially to annotated genes

List of tools

Convert gtf to gff3

CLAT for Linux using ipvlan

This proof of concept uses ipvlan feature of Linux to split up main network interface into two in order to use one in a separate namespace with jool-siit performing CLAT translation.

This way, enabling CLAT is least intrusive to the default network namespace - no need to enable forwarding or touch firewall rules.

Conventional Commit Messages

See how a minor change to your commit message style can make a difference.

Tip

Have a look at git-conventional-commits , a CLI util to ensure these conventions and generate verion and changelogs

Commit Message Formats

Default

Importing a Docker container into Proxmox/LXC

Importing the container

For this we are going to be using lxc-create, which comes pre-installed on Proxmox but needs further dependencies to fetch the OCI images from Docker:

apt update && apt -y install skopeo umoci jq

	import tiktoken
	import langdetect
	T = tiktoken.get_encoding("o200k_base")

	length_dict = {}

	for i in range(T.n_vocab):
	try:
	length_dict[i] = len(T.decode([i]))
	except:

	[Script Info]

	Title: How AI Could Empower Any Business ｜ Andrew Ng ｜ TED
	ScriptType: v4.00+
	WrapStyle: 0
	Collisions: Reverse
	PlayResX: 384
	PlayResY: 288
	Timer: 100.0000
	ScaledBorderAndShadow: no

	# Copyright (C) 2018 Jameel Al-Aziz
	# Modified for simplicification and use within CoreOS.
	#
	# Copyright (C) 2006-2016 Amazon.com, Inc. or its affiliates.
	# All Rights Reserved.
	#
	# Licensed under the Apache License, Version 2.0 (the "License").
	# You may not use this file except in compliance with the License.
	# A copy of the License is located at
	#

	#!/bin/bash

	if [[ $(id -u) -ne 0 ]]; then
	echo "This script must be run as root"
	exit 1
	fi
	if [ -z $(pm list packages \| grep com.snapchat.android) ]; then
	echo "Snapchat not found"
	exit 1
	fi

	//
	// MIT License
	//
	// Copyright (c) 2024 Derek Selander
	//
	// Permission is hereby granted, free of charge, to any person obtaining a copy
	// of this software and associated documentation files (the "Software"), to deal
	// in the Software without restriction, including without limitation the rights
	// to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
	// copies of the Software, and to permit persons to whom the Software is

	<your-ticket-prefix>
	# Subject Line
	# ======================================================================
	#
	# One line less than 72 characters in length. Generally focused on the
	# "What" rather than the "Why".
	#
	# Format <tag>: <message>
	#
	# `tag`: can be either a defined list of tags like "Add", "Remove",